Difference between revisions of "MaCH Options"
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Revision as of 02:11, 17 June 2010
greedy
use only the reference haplotypes (fed to -h or --haps) as reference
states S
use a random subset of S haplotypes as reference
sampleInterval SI
output every SI rounds based on random sampling from the last Markov iteration
interimInterval II
output every II rounds by building consensus from all previous Markov iterations
