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| + | <div id="mf-mainpage"> |
| <!-- BANNER ACROSS TOP OF PAGE --> | | <!-- BANNER ACROSS TOP OF PAGE --> |
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− | <br> [[Image:2009.08 Group Retreat Photo.jpg|center|400px|Group Photo]] | + | [[Image:AbecasisRetreat2016.jpg|700px|center|Group Photo 2016]] |
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| + | <!-- Below are old images from 2009 and 2014 Retreats --> |
| + | <!-- <br> [[Image:Abecasis2015Retreat.JPG|700px|center|Group Photo 2015]] --> |
| + | <!-- <br> [[Image:Abecasis2014Retreat.JPG|700px|center|Group Photo 2014]] --> |
| + | <!-- <br> [[Image:2009.08 Group Retreat Photo.jpg|center|400px|Group Photo]]--> |
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| == Welcome! == | | == Welcome! == |
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− | Welcome to our brand new wiki! | + | Welcome to our wiki! |
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| If you would like to contribute, [[Special:UserLogin|log-in]] or [[Special:RequestAccount|request an account]]. We recommend using your e-mail address or Michigan uniqname as your user id. | | If you would like to contribute, [[Special:UserLogin|log-in]] or [[Special:RequestAccount|request an account]]. We recommend using your e-mail address or Michigan uniqname as your user id. |
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| #Variant Annotations using [[VcfCodingSnps]] | | #Variant Annotations using [[VcfCodingSnps]] |
| #Rare Variant Analysis using [[RvTests]] | | #Rare Variant Analysis using [[RvTests]] |
| + | #Rare Variant Association Analysis in family samples [[FamRvTest]] |
| #Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]] | | #Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]] |
| #C++ APIs for sequence analsysis using [[C++ Library: libStatGen]] | | #C++ APIs for sequence analsysis using [[C++ Library: libStatGen]] |
− | #Meta-analyze single variants or genes, including tools for generating summary statistics ([[Rvtests]],[[Rare-Metal-Worker]]), annotating summary statistics ([[TabAnno]]), and performing meta-analysis (command line tool [[Rare-Metal]] and R package [[RareMETALS]]). | + | #Meta-analysis of single variant or gene-level associations [[RAREMETAL-SOFTWARE]] |
| + | #Sequencing study design helper [[Rarefy]] |
| + | #Local ancestry inference (ancestry painting) using off-targeted sequence data [[SEQMIX]] |
| + | #Association Container Toolbox [[EPACTS]] |
| + | #Fast Genotype Imputation Tool : [[Minimac3]] |
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| These tools and additional tools can be found on the [[Software]] page. | | These tools and additional tools can be found on the [[Software]] page. |
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− | We are developing Genome/Sequencing Processing Pipelines for anyone to use: [[GotCloud]] | + | We are developing Genome/Sequencing Processing Pipelines for anyone to use: [[GotCloud]] |
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| == High Level Tutorials == | | == High Level Tutorials == |
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| == Projects == | | == Projects == |
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| + | [[NHLBI Informatics Resource|NHLBI Genome Sequencing Project]] |
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| [[SardiNIA]] - The SardiNIA longitudinal study of aging. | | [[SardiNIA]] - The SardiNIA longitudinal study of aging. |
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− | [[1000 Genomes Project Pilot 1 SNP Calling]] | + | [[EMADS|Exome Meta-analysis of Drinking and Smoking (EMADS)]] |
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| + | [http://www.1000genomes.org The 1000 Genomes Project] |
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| == Learn Genetics == | | == Learn Genetics == |
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| *[[Computer How-Tos]] | | *[[Computer How-Tos]] |
− | | + | </div> |
− | == Abecasis Group Meeting ==
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− | 3:00-4:30 p.m. on Mondays, room 2610, SPH I.
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