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<br> [[Image:2009.08 Group Retreat Photo.jpg|center|400px|Group Photo]]
[[Image:AbecasisRetreat2016.jpg|700px|center|Group Photo 2016]]
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== Welcome! ==
== Welcome! ==
Welcome to our brand new wiki!
Welcome to our wiki!
If you would like to contribute, [[Special:UserLogin|log-in]] or [[Special:RequestAccount|request an account]]. We recommend using your e-mail address or Michigan uniqname as your user id.
If you would like to contribute, [[Special:UserLogin|log-in]] or [[Special:RequestAccount|request an account]]. We recommend using your e-mail address or Michigan uniqname as your user id.
#Variant Annotations using [[VcfCodingSnps]]
#Variant Annotations using [[VcfCodingSnps]]
#Rare Variant Analysis using [[RvTests]]
#Rare Variant Analysis using [[RvTests]]
#Rare Variant Association Analysis in family samples [[FamRvTest]]
#Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]]
#Quality control using [[C++ Executable: fastQValidator|FastQValidator]], [[VerifyBamID]], and [[BamValidator]]
#C++ APIs for sequence analsysis using [[C++ Library: libStatGen]]
#C++ APIs for sequence analsysis using [[C++ Library: libStatGen]]
#Meta-analysis of single variant or gene-level associations, including tools for generating summary statistics ([[Rvtests]],[[Rare-Metal-Worker]]), annotating summary statistics ([[TabAnno]]), and performing meta-analysis (command line tool [[Rare-Metal]] and R package [[RareMETALS]]).
#Meta-analysis of single variant or gene-level associations [[RAREMETAL-SOFTWARE]]
#Sequencing study design helper [[Rarefy]]
#Local ancestry inference (ancestry painting) using off-targeted sequence data [[SEQMIX]]
#Association Container Toolbox [[EPACTS]]
#Fast Genotype Imputation Tool : [[Minimac3]]
These tools and additional tools can be found on the [[Software]] page.
These tools and additional tools can be found on the [[Software]] page.
We are developing Genome/Sequencing Processing Pipelines for anyone to use: [[GotCloud]]
We are developing Genome/Sequencing Processing Pipelines for anyone to use: [[GotCloud]]
== High Level Tutorials ==
== High Level Tutorials ==
== Projects ==
== Projects ==
[[NHLBI Informatics Resource|NHLBI Genome Sequencing Project]]
[[SardiNIA]] - The SardiNIA longitudinal study of aging.
[[SardiNIA]] - The SardiNIA longitudinal study of aging.
[[1000 Genomes Project Pilot 1 SNP Calling]]
[[EMADS|Exome Meta-analysis of Drinking and Smoking (EMADS)]]
[[EMADS|Exome Meta-analysis of Drinking and Smoking (EMADS)]]
[http://www.1000genomes.org The 1000 Genomes Project]
== Learn Genetics ==
== Learn Genetics ==
*[[Computer How-Tos]]
*[[Computer How-Tos]]
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