From Genome Analysis Wiki
Jump to navigationJump to search
61 bytes added
, 09:12, 25 March 2010
Line 45: |
Line 45: |
| | | |
| [[FastQ Validator]] -- Check that a FASTQ file conforms to specification. | | [[FastQ Validator]] -- Check that a FASTQ file conforms to specification. |
| + | |
| + | [[BamIdentityCheck]] -- Check that mapped reads are consistent with known genotypes for each individual. |
| + | |
| + | === File Readers === |
| + | [[BamFile]] -- Reads a BAM/SAM file. |
| | | |
| [[FastQFile]] -- Read a FASTQ file sequence by sequence. Validating the sequence as it is read. | | [[FastQFile]] -- Read a FASTQ file sequence by sequence. Validating the sequence as it is read. |
− |
| |
− | [[BamIdentityCheck]] -- Check that mapped reads are consistent with known genotypes for each individual.
| |
| | | |
| === File Conversion === | | === File Conversion === |