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, 19:13, 12 October 2010
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| | <code>--sample 5</code> | | | <code>--sample 5</code> |
− | | Request the output of a set of haplotypes based on random sampling from the last Markov iteration. Instead of the best guess haplotypes (default output of MaCH) these haplotypes sets can be used for imputation. | + | | Request that random (but plausible) sets of haplotypes for each individual should be drawn every 5 iterations. This parameter is optional, but for some rare variant analyses, these alternative haplotypes can be very useful. |
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| | <code>--phase</code> | | | <code>--phase</code> |