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, 19:37, 18 March 2012
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| | <code>--refHaps ref.hap.gz </code> | | | <code>--refHaps ref.hap.gz </code> |
| | Reference haplotypes (e.g. from [http://www.sph.umich.edu/csg/abecasis/MACH/download/1000G-2010-06.html MaCH download page]) | | | Reference haplotypes (e.g. from [http://www.sph.umich.edu/csg/abecasis/MACH/download/1000G-2010-06.html MaCH download page]) |
| + | |- |
| + | | <code>--vcf </code> |
| + | | This option specifies that the provided --refHaps file is provided in VCF format , no --refSNPs file needed. |
| |- | | |- |
| | <code>--snps target.snps.gz </code> | | | <code>--snps target.snps.gz </code> |