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== Running Imputation ==
== Running Imputation ==
After the pre-phasing has been done, we can begin to run the imputation. But before that,we need to convert our phased GWAS panel files (obtained above) to VCF format (since Minimac3 can only use VCF format files) and also download the reference panels required for imputation. Consequently, we would have the following steps.
===Converting GWAS Panel Files into VCF ===
= Chromosome X Imputation =
= Chromosome X Imputation =
