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, 01:29, 29 January 2015
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| --prefix testRun | | --prefix testRun |
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− | Here <code>refPanel.vcf</code> is the reference panel used in VCF format (e.g. 1000 Genomes), <code>targetStudy.vcf</code> is the phased GWAS data in VCF format, and <code>testRun</code> is the prefix for the output files. Some commonly used reference panels are available for download in [[#Reference Panels for Download| Reference Panels]]. See wiki page on [[Minimac3 Usage| Detailed Usage]] and [[Minimac3 Imputation Cookbook|Imputation Cookbook]] for further details on using '''Minimac3''' for imputation analysis. | + | Here <code>refPanel.vcf</code> is the reference panel used in VCF format (e.g. 1000 Genomes), <code>targetStudy.vcf</code> is the phased GWAS data in VCF format, and <code>testRun</code> is the prefix for the output files. Some commonly used reference panels are available for download in [[Minimac3 Imputation Cookbook#Reference Panels for Download| Reference Panels]]. See wiki page on [[Minimac3 Usage| Detailed Usage]] and [[Minimac3 Imputation Cookbook|Imputation Cookbook]] for further details on using '''Minimac3''' for imputation analysis. |
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| Users can always type the following for further support: | | Users can always type the following for further support: |