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= Reference Panels for Download =
= Reference Panels for Download =
Some commonly used reference panels are available for download here.
Some commonly used reference panels are available for download here:
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
{| class="wikitable" style="text-align:center" border="1" cellpadding="2"
|- bgcolor="lightgray"
|- bgcolor="lightgray"
! Reference Panel
! width="150px" |Reference Panel
! Number of Samples
! width="100px" |Number <br> of Samples
! Description
! width="100px" |File Format
! Link
! width="100px" |Parameter <br> Estimates <br> Available
! width="120px" |Chromosomes
! width="80px" |Link
|-
|-
| rowspan=4 | '''1000 Genomes'''
| rowspan=4 | '''1000 Genomes''' <br>
'''Phase 3'''
'''Phase 3''' <br>
(version 5)
(version 5)
| rowspan=4 style="text-align:center" | '''2,504'''
| rowspan=4 style="text-align:center" | '''2,504'''
| GzVCF Format on Chr 1-22,X
| '''VCF'''
| -
| 1-22,X
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_VCF_Files.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_VCF_Files.tar.gz Download]
|-
|-
| M3VCF Format (With Parameter Estimates) on Chr 1-22,X
| rowspan=2 style="text-align:center" | '''M3VCF'''
| YES
| 1-22,X
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_M3VCF_FILES_WITH_ESTIMATES.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_M3VCF_FILES_WITH_ESTIMATES.tar.gz Download]
|-
|-
| M3VCF Format (Without Parameter Estimates) on Chr 1-22,X
|NO
| 1-22,X
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_M3VCF_FILES_NO_ESTIMATES.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_M3VCF_FILES_NO_ESTIMATES.tar.gz Download]
|-
|-
| Only Chr X (VCF and M3VCF format)
| '''VCF''','''M3VCF'''
| YES
| X
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_CHR_X_VCF_M3VCF_FILES.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P3_CHR_X_VCF_M3VCF_FILES.tar.gz Download]
|-
|-
| rowspan=4 | '''1000 Genomes Phase 1 (version 3)'''
| rowspan=4 | '''1000 Genomes''' <br>
'''Phase 1''' <br>
(version 3)
| rowspan=4 | '''1,092'''
| rowspan=4 | '''1,092'''
| VCF Files
| '''VCF'''
| -
| 1-22,X
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_VCF_Files.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_VCF_Files.tar.gz Download]
|-
|-
| M3VCF Format (With Parameter Estimates) on Chr 1-22,X
| rowspan=2 style="text-align:center" | '''M3VCF'''
| YES
| 1-22,X
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_M3VCF_FILES_WITH_ESTIMATES.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_M3VCF_FILES_WITH_ESTIMATES.tar.gz Download]
|-
|-
| M3VCF Format (Without Parameter Estimates) on Chr 1-22,X
| YES
| 1-22,X
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_M3VCF_FILES_NO_ESTIMATES.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_M3VCF_FILES_NO_ESTIMATES.tar.gz Download]
|-
|-
| Only Chr X (VCF and M3VCF format)
| '''VCF''','''M3VCF'''
| YES
| X
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_CHR_X_VCF_M3VCF_FILES.tar.gz Download]
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_CHR_X_VCF_M3VCF_FILES.tar.gz Download]
|}
|}
