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* '''Introducing DosageConvertor, a tool to convert imputed data in VCF format to other formats, such as MaCH or PLINK. '''
* '''Introducing [[DosageConvertor|DosageConvertor]], a tool to convert imputed data in VCF format to other formats, such as MaCH or PLINK. '''
* '''Updated descriptors on [[Minimac3 Info File| Minimac3 Info File]] with better explanation of terms.'''
* '''Updated descriptors on [[Minimac3 Info File| Minimac3 Info File]] with better explanation of terms.'''
* '''Please join our NEW [https://groups.google.com/forum/embed/?place=forum/minimac3-help&umich.edu| mailing list] to get updates about future releases, bug fixes or post queries.'''
* '''Please join our NEW [https://groups.google.com/forum/embed/?place=forum/minimac4-help#!forum/minimac4-help mailing list] to get updates about future releases, bug fixes or post queries.'''
* '''Download New Version 2.0.1 !!! (Updated June 2016) !!!''' See [[Minimac3 ChangeLog | ChangeLog ]] for details !!!
* '''Download New Version 2.0.1 !!! (Updated June 2016) !!!''' See [[Minimac3 ChangeLog | ChangeLog ]] for details !!!
= Useful Wiki Pages =
= Useful Wiki Pages =
'''Minimac3 ''' is currently available as a release version. Commonly used reference panels in <font face=Courier>M3VCF</font> format are available for download in [[#Reference Panels for Download | Reference Panels]].
'''Minimac3 ''' is currently available as a release version. Commonly used reference panels in <font face=Courier>M3VCF</font> format are available for download in [[#Reference Panels for Download | Reference Panels]].
'''Please join our NEW [https://groups.google.com/forum/embed/?place=forum/minimac3-help&umich.edu| mailing list] to get updates about future releases or report possible bugs or email them to [mailto:sayantan@umich.edu Sayantan Das].'''
'''Please join our NEW [https://groups.google.com/forum/embed/?place=forum/minimac4-help#!forum/minimac4-help mailing list] to get updates about future releases or report possible bugs or email them to [mailto:sayantan@umich.edu Sayantan Das].'''
'''VERSION: 2.0.1 !!! (Updated 6.6.2016) !!!'''
'''VERSION: 2.0.1 !!! (Updated 6.6.2016) !!!'''
! Download Link
! Download Link
|-
|-
| Minimac3 Source Files
| Source Files
| [ftp://share.sph.umich.edu/minimac3/Minimac3.v2.0.1.tar.gz UNIX Users ]
| [ftp://share.sph.umich.edu/minimac3/Minimac3.v2.0.1.tar.gz UNIX Users ]
|-
| Binary Executable <sup>†</sup>
| [ftp://share.sph.umich.edu/minimac3/Minimac3Executable.tar.gz UNIX Users ]
|}
'''<sup>†</sup>''' Binary executables are NOT guaranteed to run on every LINUX machine. Please compile from source files if you have trouble with the executable, or else contact the author [mailto:sayantan@umich.edu Sayantan Das]..
= Usage=
= Usage=
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_CHR_X_VCF_M3VCF_FILES.tar.gz Download] <!--[ftp://share.sph.umich.edu/minimac3/G1K_P1_CHR_X_VCF_M3VCF_FILES.tar.gz Download]-->
| [ftp://share.sph.umich.edu/minimac3/G1K_P1_CHR_X_VCF_M3VCF_FILES.tar.gz Download] <!--[ftp://share.sph.umich.edu/minimac3/G1K_P1_CHR_X_VCF_M3VCF_FILES.tar.gz Download]-->
|}
|}
= Reference =
If you use [[minimac3]] please cite:
''Das S, Forer L, Schönherr S, Sidore C, Locke AE'' et al. Next-generation genotype imputation service and methods. Nature Genetics 2016; 48, 1284–1287 (2016) doi:10.1038/ng.3656[http://www.nature.com/ng/journal/v48/n10/full/ng.3656.html]
= Contact =
= Contact =
In case of any queries and bugs please contact [mailto:sayantan@umich.edu Sayantan Das].
In case of any queries and bugs please contact [mailto:sayantan@umich.edu Sayantan Das].
