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         --input-haps Gwas.Chr20.Phased.Output \
 
         --input-haps Gwas.Chr20.Phased.Output \
 
         --output-vcf Gwas.Chr20.Phased.Output.VCF.format.vcf
 
         --output-vcf Gwas.Chr20.Phased.Output.VCF.format.vcf
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= Useful Wiki Pages =
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There are a few pages in this Wiki that may be useful to for '''Minimac3''' users. Here are links to a few:
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* [[Minimac3| Minimac3 Overview Page]]
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* [[Minimac3 Imputation Cookbook]] ('''Recommended for New Users!!''')
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* [[Minimac3 Cookbook : Pre-Phasing | Pre-Phasing ]]
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* [[Minimac3 Cookbook : Converting Files to VCF| Converting Files to VCF]]
    
= Contact =
 
= Contact =
    
In case of any queries and bugs please contact [mailto:sayantan@umich.edu Sayantan Das].
 
In case of any queries and bugs please contact [mailto:sayantan@umich.edu Sayantan Das].
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