Changes

From Genome Analysis Wiki
Jump to navigationJump to search

Minimac3 Examples (view source)

Revision as of 01:01, 29 January 2015

218 bytes added ,  01:01, 29 January 2015
→‎Examples
Line 7: Line 7:  
= Examples =
 
= Examples =
   −
To look at the examples, the folder of '''Minimac3 ''' needs to be copied to the users local directory first. Then move to the folder <font face=Courier>LocalDirectory/test/</font>
+
Here we give some examples of using Minimac3 for typical imputation experiments. Users should check wiki page on [[Minimac3 Usage|Minimac3 Usage]] for further details on available parameter options.
   −
  cp -r /net/fantasia/home/sayantan/Softwares/Minimac3/ LocalDirectoryMinimac3/
+
All example data sets used below are available in the '''Minimac3''' package available for download [[#Download|here]]. Users should follow the following steps to compile '''Minimac3''' after downloading it.
−
  cd LocalDirectoryMinimac3/test/
+
 
 +
## EXTRACT MINIMAC3 AND COMPILE
 +
&nbsp;
 +
tar -xzvf Minimac3.v1.0.0.tar.gz
 +
cd Minimac3/
 +
make
 +
cd test/
    
The following example uses a VCF reference file <font face=Courier>[refPanel.vcf]</font> and a VCF target sample file <font face=Courier>[targetStudy.vcf]</font>
 
The following example uses a VCF reference file <font face=Courier>[refPanel.vcf]</font> and a VCF target sample file <font face=Courier>[targetStudy.vcf]</font>
Santy.8128
487

edits

Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12568"

Navigation menu