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Minimac3 Imputation Cookbook (view source)

Revision as of 21:41, 29 January 2015

28 bytes added ,  21:41, 29 January 2015
→‎Pre-Phasing the GWAS data
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== Pre-Phasing the GWAS data ==
 
== Pre-Phasing the GWAS data ==
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Pre-Phasing can be done using either [http://www.sph.umich.edu/csg/abecasis/MaCH/ MaCH] or [https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html SHAPEIT].
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Pre-Phasing can be done using either [http://www.sph.umich.edu/csg/abecasis/MaCH/ MaCH] or [https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html SHAPEIT], the most commonly used tools
    
=== MaCH ===
 
=== MaCH ===
Santy.8128
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