Changes

<font face=Courier>"--refHaps"</font> denotes the main input reference file could either be a VCF file or <font face=Courier>M3VCF</font> file. No handle is necessary for denoting type of file, program will detect it itself.  

<font face=Courier>"--refHaps"</font> denotes the main input reference file could either be a VCF file or <font face=Courier>M3VCF</font> file. No handle is necessary for denoting type of file, program will detect it itself.  

Minimac3 can handle both VCF files or <font face=Courier>M3VCF</font> files as input for the reference panel. The program can itself identify the type of file, and no handle is necessary for that.  <font face=Courier>M3VCF</font> files are customized files created by Minimac3 (possibly in some previous run) that stores large reference panels in a compact form so as to save memory and computation time involved in reading large files. <font face=Courier>M3VCF</font> files must be generated in some previous run of Minimac3 and can be saved and used in later runs for faster loading of data. See wiki page on [[M3VCF Files| <font face=Courier>M3VCF</font> files]] for further details.

Minimac3 can handle both VCF files or <font face=Courier>M3VCF</font> files as input for the reference panel. The program can itself identify the type of file, and no handle is necessary for that.  <font face=Courier>M3VCF</font> files are customized files created by Minimac3 (possibly in some previous run) that stores large reference panels in a compact form so as to save memory and computation time involved in reading large files. See wiki page on [[M3VCF Files| <font face=Courier>M3VCF</font> files]] for further details. Users can download commonly used reference panels in both VCF and <font face=Courier>M3VCF</font> format from [[Minimac3#Reference Panels for Download |Reference Panels]].

==Target Haplotypes==

==Target Haplotypes==