From Genome Analysis Wiki
Jump to navigationJump to search
60 bytes added
, 19:17, 27 August 2012
Line 271: |
Line 271: |
| minimac (version 8.15.12 or newer) supports the imputation of genotypes on the X chromosome | | minimac (version 8.15.12 or newer) supports the imputation of genotypes on the X chromosome |
| (reference haplotypes can be found [ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.chrX.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz here]) | | (reference haplotypes can be found [ftp://share.sph.umich.edu/1000genomes/fullProject/2012.03.14/GIANT.chrX.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.ALL.vcf.gz.tgz here]) |
| + | |
| + | X chromosome imputation consists of the following 3 steps: |
| | | |
| === 1. Split X chromosome pedigree file by sex === | | === 1. Split X chromosome pedigree file by sex === |