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== Shoud I use MaCH or minimac? ==
== Shoud I use MaCH or minimac? ==
The imputation quality of both approaches is comparable.
The imputation quality of both approaches is comparable.
If you are carrying out only an one-time imputation and you are focusing only on autosomes - then go with MaCH.
If you are carrying out only an one-time imputation and you are focusing only on autosomes - then go with MaCH.
If you are planning to re-impute into new reference panels and your are interested into the X-chromosome - then minimac is the right choice for you.
If you are planning to re-impute into new reference panels and your are interested into the X-chromosome - then minimac is the right choice for you.
