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Revision as of 14:03, 29 May 2012
, 14:03, 29 May 2012→Imputation into Phased Haplotypes - minimac
foreach chr (`seq 1 22`)
foreach chr (`seq 1 22`)
runon -m 1024 minimac --refHaps ref.hap.$chr.gz --refSnps ref.snps.$chr.gz --snpAliases dbsnp134-merges.txt.gz \
runon -m 1024 minimac --refHaps ref.hap.$chr.gz --vcfReference \
--haps chr$chr.haps.gz --snps chr.$chr.snps --prefix chr$chr.imputed
--haps chr$chr.haps.gz --snps chr.$chr.snps --prefix chr$chr.imputed
end
end
