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Jump to navigationJump to searchMinimac: GIANT 1000 Genomes Imputation Cookbook (view source)
Revision as of 14:04, 29 May 2012
, 14:04, 29 May 2012→Further Time Savings
set snps = /data/1000g/snps/chr$chr.snps
set snps = /data/1000g/snps/chr$chr.snps
minimac --refHaps $haps --refSnps $snps --snpAliases dbsnp134-merges.txt.gz \
minimac --refHaps $haps --refSnps $snps --vcfReference \
--haps ${chunk:r}.gz --snps ${chunk}.snps --autoClip autoChunk-chr$chr.dat \
--haps ${chunk:r}.gz --snps ${chunk}.snps --autoClip autoChunk-chr$chr.dat \
--prefix ${chunk:r}.imputed >& ${chunk:r}-minimac.log &
--prefix ${chunk:r}.imputed >& ${chunk:r}-minimac.log &
