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Revision as of 14:14, 29 May 2012
, 14:14, 29 May 2012→Imputation into Phased Haplotypes - minimac
minimac --refHaps ref.hap.$chr.gz --vcfReference --haps chr$chr.haps.gz --snps chr.$chr.snps --prefix chr$chr.imputed
minimac --refHaps ref.hap.$chr.gz --vcfReference --haps chr$chr.haps.gz --snps chr.$chr.snps --prefix chr$chr.imputed
A detailed description of all minimac options is available [[Minimac Command Reference|elsewhere]]. Here is a brief description of the above parameters:
A detailed description of all minimac options is available [[Minimac Command Reference|elsewhere]]. Here is a brief description of the above parameters:
