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Back to the beginning [http://genome.sph.umich.edu/wiki/Pipelines]
Back to the beginning: [[GotCloud]]
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| style="width:100%; text-align:center; color:#000; font-size:162%; border:none; margin:0; padding:.1em; color:#000;"|We are still working to figure out how to get S3 working with the 1000G data.
For now, we found it more reliable to copy the data into a volume and run on that.
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Ref: http://thecrystalclouds.wordpress.com/2012/05/18/installation-and-setup-of-s3fs-on-amazon-web-services/
Ref: http://thecrystalclouds.wordpress.com/2012/05/18/installation-and-setup-of-s3fs-on-amazon-web-services/
and http://code.google.com/p/s3fs/wiki/FuseOverAmazon
It seemed like such a good idea. Rather than copy the data from S3 storage, why not mount the S3 volume
It seemed like such a good idea. Rather than copy the data from S3 storage, why not mount the S3 volume
mkdir /mnt/s3
mkdir /mnt/s3
s3fs 1000genomes -o accessKeyId=AKourkey2Q -o secretAccessKey=ftoutsecretaccesskeyIGf -o use_cache=/tmp -o allow_other /mnt/s3
s3fs 1000genomes -o accessKeyId=AKourkey2Q -o secretAccessKey=ftoutsecretaccesskeyIGf -o use_cache=/tmp -o allow_other /mnt/s3
# Did it work?
# Did it work?
cd /mnt
cd /mnt
