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827 bytes added ,  13:35, 27 September 2010
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; --minrsq
 
; --minrsq
 
: only record markers that have rsq greater than a specific threshold
 
: only record markers that have rsq greater than a specific threshold
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== X Chromosome Analyses ==
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Use the <code>new_fugueX</code> executable.
    
== Download ==
 
== Download ==
   −
A source file with the current distribution is available for download from this [http://www.sph.umich.edu/csg/abecasis/downloads/generic-new_fugue-2010-05-25.tar.gz source tar-ball].
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A source file with the current distribution is available for download from this [http://www.sph.umich.edu/csg/abecasis/downloads/generic-new_fugue-2010-06-02.tar.gz source tar-ball]. After downloading, you should unpack the archive using <code>tar</code> and run <code>make</code> to compile and install <code>new_fugue</code>. Typically, that should work like this:
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    tar -zxvf generic-new_fugue-2010-06-02.tar.gz
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    cd generic-new_fugue
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    make all
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    make install
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In some systems, notably those based on Ubuntu, you might see an error message complaining that zlib is missing. [[zlib]] is required for
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new_fugue to handle compressed files. If you have administrative privileges on your machine, you will want to install zlib using the <code>yum</code> package manager. The command line will look like this:
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    yum install zlib-devel
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If yum is not installed, you can try the following:
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    sudo apt-get install zlib1g-dev
    
== References ==
 
== References ==
    
Abecasis GR and Wigginton JE (2005). Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers. Am J Hum Genet 77:754-67
 
Abecasis GR and Wigginton JE (2005). Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers. Am J Hum Genet 77:754-67
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