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, 13:09, 8 October 2012
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| polymutt -p input.ped -d input.dat --in_vcf input.vcf --out_vcf out.vcf --nthreads 4 | | polymutt -p input.ped -d input.dat --in_vcf input.vcf --out_vcf out.vcf --nthreads 4 |
| | | |
− | Examples for ''de novo'' mutation detection (works only for GLF field): | + | Examples for ''de novo'' mutation detection (works only for GLF files): |
| polymutt -p input.ped -d input.dat -g input.gif --denovo --out_vcf out.denovo.vcf --nthreads 4 | | polymutt -p input.ped -d input.dat -g input.gif --denovo --out_vcf out.denovo.vcf --nthreads 4 |
| polymutt -p input.ped -d input.dat -g input.gif --denovo --rate_denovo 1.2e-06 --out_vcf out.denovo.vcf --nthreads 4 | | polymutt -p input.ped -d input.dat -g input.gif --denovo --rate_denovo 1.2e-06 --out_vcf out.denovo.vcf --nthreads 4 |