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, 23:33, 1 July 2015
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| * User defined r2 cutoff for LD pruning , min of average depth for filtering | | * User defined r2 cutoff for LD pruning , min of average depth for filtering |
− | vcf2map --vcf input.vcf --ped input.ped --map genetic_map_GRCh37_chr1.txt --include_list 1000G.SNV.clean.MAF0.05.tbl.gz --max_r2 0.2 --min_avg_dp 2 --out_map chr1.r0.2.map | + | vcf2map --vcf input.vcf --ped input.ped --map genetic_map_GRCh37_chr1.txt --include_list 1000G.SNV.clean.MAF0.05.tbl.gz --max_r2 0.2 --min_avg_dp 2 --out_map chr1.r0.2.map |
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| == Examples of running polymutt2 == | | == Examples of running polymutt2 == |