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== Updates ==
== Updates ==
The latest version of 0.1 is available for [[#Download | Download]].
The latest version of v0.2 is available for [[#Download | Download]].
== Note ==
'''Polymutt2 can only handle one chromosome, so please run it chromosome by chromosome'''.
== Compilation ==
== Compilation ==
* If only a range is desire to output (for example the whole chromosome can be divided into multiple parallel jobs each working on a range)
* If only a range is desire to output (for example the whole chromosome can be divided into multiple parallel jobs each working on a range)
polymutt2 -p input.ped -m chr1.map --in_vcf input.vcf --out_vcf out.vcf --out_range 1:1000000-2000000
polymutt2 -p input.ped -m chr1.map --in_vcf input.vcf --out_vcf out.vcf --out_range 1:1000000-2000000
== File format ==
See PLINK http://pngu.mgh.harvard.edu/~purcell/plink/data.shtml for file format
== Download ==
== Download ==
