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, 19:06, 16 February 2015
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| *To analyze only a subset of families in the sample: | | *To analyze only a subset of families in the sample: |
| rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --famList your.file.with.famID --prefix your.output.prefix | | rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --famList your.file.with.famID --prefix your.output.prefix |
| + | NOTE: although only the subset of families will be "RAREFIED", all samples saved in your.ped will be used to fit variance component model. |
| *To analyze only one family: | | *To analyze only one family: |
| rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --famID fam123 --prefix your.output.prefix | | rarefy --ped your.ped --dat your.dat --traitIncreasing --traitDecreasing --famID fam123 --prefix your.output.prefix |
| + | NOTE: although only the family included in --famID will be "RAREFIED", all samples saved in your.ped will be used to fit variance component model. |