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, 14:26, 17 May 2015
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| * In the file with summary statistics named prefix.traitName.singlevar.score.txt contains summary statistics that are needed by Rare-Metal. An example is shown in below: | | * In the file with summary statistics named prefix.traitName.singlevar.score.txt contains summary statistics that are needed by Rare-Metal. An example is shown in below: |
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− | LDL mean= -0.00, variance= 1.00, heritability= 34.30
| + | LDL mean= -0.00, variance= 1.00, heritability= 34.30 |
− | CHR POS REF_ALLELE ALT_ALLELE INFORMATIVE_N FOUNDER_AF ALL_AF INFORMATIVE_AC HWE_PVALUE STAT ALT_ALLELE_EFFSIZE PVALUE
| + | CHR POS REF_ALLELE ALT_ALLELE INFORMATIVE_N FOUNDER_AF ALL_AF INFORMATIVE_AC HWE_PVALUE STAT ALT_ALLELE_EFFSIZE PVALUE |
− | 10 45410002 G A 6103 0.0341589 0.0341589 410 0.165893 126.205 0.309798 4.03074e-10 | + | 10 45410002 G A 6103 0.034159 0.034159 410 0.165893 126.2050 0.309798 4.030740e-10 |
− | 19 45412079 G A 6103 0.0368124 0.0368124 434 0.714645 -265.84 -0.587356 7.87851e-36 | + | 19 45412079 G A 6103 0.036812 0.036812 434 0.714645 -265.8400 -0.587356 7.878510e-36 |
− | 19 45414451 G A 6103 0.444989 0.444989 5312 0.0759271 -26.1212 -0.00837122 0.640058 | + | 19 45414451 G A 6103 0.444989 0.444989 5312 0.075927 -26.1212 -0.008371 6.400580e-01 |
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| * pvalues from the above output are from the family-based single variant score test. | | * pvalues from the above output are from the family-based single variant score test. |