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16 bytes removed ,  11:59, 13 March 2014
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   ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --prefix your.study
 
   ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --prefix your.study
 
* An example command line to use when you have genotype info saved in VCF file and you want to adjust covariates first and then inverse normalize residuals is as following:
 
* An example command line to use when you have genotype info saved in VCF file and you want to adjust covariates first and then inverse normalize residuals is as following:
   ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --makeResiduals --useCovariates --inverseNormal --prefix your.study
+
   ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --makeResiduals --inverseNormal --prefix your.study
 
* For more examples, please go to [[http://genome.sph.umich.edu/wiki/Rare-Metal-Worker#Examples Examples]].
 
* For more examples, please go to [[http://genome.sph.umich.edu/wiki/Rare-Metal-Worker#Examples Examples]].
  
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