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, 11:59, 13 March 2014
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| ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --prefix your.study | | ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --prefix your.study |
| * An example command line to use when you have genotype info saved in VCF file and you want to adjust covariates first and then inverse normalize residuals is as following: | | * An example command line to use when you have genotype info saved in VCF file and you want to adjust covariates first and then inverse normalize residuals is as following: |
− | ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --makeResiduals --useCovariates --inverseNormal --prefix your.study | + | ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --makeResiduals --inverseNormal --prefix your.study |
| * For more examples, please go to [[http://genome.sph.umich.edu/wiki/Rare-Metal-Worker#Examples Examples]]. | | * For more examples, please go to [[http://genome.sph.umich.edu/wiki/Rare-Metal-Worker#Examples Examples]]. |
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