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* To execute the program, go to /RareMetalWorker_0.4.8/RareMetalWorker/bin, then the program can be executed by ./raremetalworker.
* To execute the program, go to /RareMetalWorker_0.4.8/RareMetalWorker/bin, then the program can be executed by ./raremetalworker.
* Some example command lines when you have genotype info saved in PED/DAT file are in the following:
* Some example command lines when you have genotype info saved in PED/DAT file are in the following. For more examples, please refer to [[RAREMETALWORKER#Example_Command_Lines | '''RAREMETALWORKER EXAMPLES''']].
If you want to analyze the sample as unrelated individuals, then use
If you want to analyze the sample as unrelated individuals, then use
./raremetalworker --ped your.ped --dat your.dat --prefix your.study (this will give your output a recognizable prefix)
./raremetalworker --ped your.ped --dat your.dat --prefix your.study (this will give your output a recognizable prefix)
If you want to analyze the sample as related using genomic relationship matrix, then use
If you want to analyze the sample as related using genomic relationship matrix, then use
./raremetalworker --ped your.ped --dat your.dat --vcf your.vcf.gz --kinGeno --kinSave --prefix your.study
./raremetalworker --ped your.ped --dat your.dat --vcf your.vcf.gz --kinGeno --kinSave --prefix your.study
==Method==
==Method==
