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=====Log File=====
=====Log File=====
* RMW generates a log file with options used:
* RMW automatically generates a log file named "yourprefix.singlevar.log".
* The first part of the log file has options used for your analysis saved.
The following parameters are in effect:
Input Files:
============================
--ped [sim1.X.pheno.ped]
--dat [sim1.X.pheno.dat]
--vcf [sim1.X.vcf.gz]
--dosage [false]
--noeof [false]
Output Files:
============================
--prefix [rmw.sepX]
--LDwindow [1000000]
--zip [false]
--thin [false]
--labelHits [false]
VC Options:
============================
--vcX [true]
--separateX [true]
Trait Options:
============================
--makeResiduals [false]
--inverseNormal [false]
--traitName []
Model Options:
============================
--recessive [false]
--dominant [false]
Kinship Source:
============================
--kinPedigree [true]
--kinGeno [false]
--kinFile []
--kinxFile []
--kinSave [false]
Kinship Options:
============================
--kinMaf [0.05]
--kinMiss [0.05]
Chromosome X:
============================
xLabel [X]
xStart [2699520]
xEnd [154931044]
maleLabel [1]
femaleLabel [2]
* The second part of the log file has all the warnings and executing messaged saved.
=====Graphs=====
=====Graphs=====
