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* Adding --separateX to the above command line will only use chromosome X kinship to fit the variance component model:
* Adding --separateX to the above command line will only use chromosome X kinship to fit the variance component model:
prompt> $PATH/bin/raremetalworker --ped yourInput.ped --dat yourInput.dat --kinPedigree --vcX --separateX --vcf yourInput.vcf.gz --prefix yourFavoritePrefix
prompt> $PATH/bin/raremetalworker --ped yourInput.ped --dat yourInput.dat --kinPedigree --vcX --separateX --vcf yourInput.vcf.gz --prefix yourFavoritePrefix
* Please refer to [[RAREMETALWORKER_method | '''method''']] for methods and [[RAREMETALWORKER_SPECIAL_TOPIC#chromosomeX | '''software specs''']] for technical details.
===Using MERLIN format PED/DAT INPUT FILES===
===Using MERLIN format PED/DAT INPUT FILES===
