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, 19:01, 16 November 2012
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| LDL mean= -0.00, variance= 1.00, heritability= 34.30 | | LDL mean= -0.00, variance= 1.00, heritability= 34.30 |
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| CHR POS REF_ALLELE ALT_ALLELE INFORMATIVE_N FOUNDER_AF ALL_AF INFORMATIVE_AC STAT ALT_ALLELE_EFFSIZE PVALUE | | CHR POS REF_ALLELE ALT_ALLELE INFORMATIVE_N FOUNDER_AF ALL_AF INFORMATIVE_AC STAT ALT_ALLELE_EFFSIZE PVALUE |
| chr1 762320 G A 6103 0.0038225 0.0038225 45 4.73428 0.0949001 0.502675 | | chr1 762320 G A 6103 0.0038225 0.0038225 45 4.73428 0.0949001 0.502675 |
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| chr1 878744 C G 6103 0.00667334 0.00667334 80 -19.5138 -0.220432 0.0380796 | | chr1 878744 C G 6103 0.00667334 0.00667334 80 -19.5138 -0.220432 0.0380796 |
| chr1 879381 G A 6103 8.31117e-05 8.31117e-05 1 -0.831691 -0.61887 0.473108 | | chr1 879381 G A 6103 8.31117e-05 8.31117e-05 1 -0.831691 -0.61887 0.473108 |
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| + | * pvalues from the above output are from the family-based single variant score test. |
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| + | * prefix.traitName.singlevar.cov.txt contains the LD matrix among a variant and the adjacent markers within a prefixed-sized window. The default window size is 1MB. It has the following format: |
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| + | CHR POS VAR_POS_IN_WINDOW LD_MATRIX |
| + | chr1 762320 762320,865628,865665,878744,879381,1560000 0.0359084,-0.000242112,-0.00125797,-0.000993422,-0.000344509,-0.00017077, |
| + | chr1 865628 865628,865665,878744,879381,1560000,1867659 0.419804,-0.0103663,-0.00635265,0.0594056,0.0534505,-0.00462183, |
| + | chr1 878744 878744,879381,1560000,1867659,1877659 0.000404537,-0.000235215,-1.4455e-05,-8.69137e-06,-3.1027e-05, |
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| == Examples == | | == Examples == |