From Genome Analysis Wiki
Jump to navigationJump to search
2 bytes removed
, 20:15, 18 November 2012
Line 71: |
Line 71: |
| | | |
| ==== VCF File ==== | | ==== VCF File ==== |
− | * Another option is to use VCF as input. Please refer to the following link for VCF file specification: [[http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 | 1000 genome wiki VCF specs]] | + | * Another option is to use VCF as input. Please refer to the following link for VCF file specification: [[http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-version-41 1000 genome wiki VCF specs]] |
| * VCF file should be compressed by bgzip and indexed by tabix, using the following command: | | * VCF file should be compressed by bgzip and indexed by tabix, using the following command: |
| bgzip input.vcf ## this command will produce input.vcf.gz | | bgzip input.vcf ## this command will produce input.vcf.gz |