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, 02:24, 4 December 2012
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| * When PED file has genotypes saved, there is no need for a VCF file as input. | | * When PED file has genotypes saved, there is no need for a VCF file as input. |
| * Rare-Metal-Worker takes PED/DAT file in Merlin format. Please refer to [[http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html PED/DAT format description]] for details. | | * Rare-Metal-Worker takes PED/DAT file in Merlin format. Please refer to [[http://www.sph.umich.edu/csg/abecasis/merlin/tour/input_files.html PED/DAT format description]] for details. |
− | * DAT file must have variant names in the following format "M chr:pos". An example DAT file is in the following: | + | * An example PED file is in the following: |
| + | 1 1 0 0 1 1.5 1 23 A A A A A A A A A A |
| + | 2 1 0 0 1 1.0 1 34 A C A C A C A C A C |
| + | 3 1 0 0 2 0.4 1 43 A A A A A A A A A A |
| + | 4 1 0 0 2 0.9 1 13 A C A C A C A C A C |
| + | * The corresponding DAT file is in the following: |
| + | T YourTraitName |
| + | C SEX |
| + | C AGE |
| M 1:123456 | | M 1:123456 |
| M 1:234567 | | M 1:234567 |
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| M 2:222222 | | M 2:222222 |
| M X:12345 | | M X:12345 |
− | M X:111111
| + | * DAT file must have variant names in the following format "M chr:pos". |
− | C SEX
| |
− | C AGE
| |
− | C AGE2
| |
− | T LDL
| |
− | T HDL
| |
| * Orders of labels in DAT file have to match the order of fields in PED file. | | * Orders of labels in DAT file have to match the order of fields in PED file. |
| * '''Markers in PED and DAT file must be sorted by chromosome and position.''' | | * '''Markers in PED and DAT file must be sorted by chromosome and position.''' |