2,004
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Output Formats
LDL mean= -0.00, variance= 1.00, heritability= 34.30
LDL mean= -0.00, variance= 1.00, heritability= 34.30
CHR POS REF_ALLELE ALT_ALLELE INFORMATIVE_N FOUNDER_AF ALL_AF INFORMATIVE_AC HWE_PVALUE STAT ALT_ALLELE_EFFSIZE PVALUE
CHR POS REF_ALLELE ALT_ALLELE INFORMATIVE_N FOUNDER_AF ALL_AF INFORMATIVE_AC HWE_PVALUE STAT ALT_ALLELE_EFFSIZE PVALUE
10 45410002 G A 6103 0.0341589 0.0341589 410 0.165893 126.205 0.309798 4.03074e-10
19 45412079 G A 6103 0.0368124 0.0368124 434 0.714645 -265.84 -0.587356 7.87851e-36
19 45414451 G A 6103 0.444989 0.444989 5312 0.0759271 -26.1212 -0.00837122 0.640058
* pvalues from the above output are from the family-based single variant score test.
* pvalues from the above output are from the family-based single variant score test.
CHR POS VAR_POS_IN_WINDOW LD_MATRIX
CHR POS VAR_POS_IN_WINDOW LD_MATRIX
1 762320 762320,865628,865665,878744,879381,1560000 0.0359084,-0.000242112,-0.00125797,-0.000993422,-0.000344509,-0.00017077,
1 865628 865628,865665,878744,879381,1560000,1864659 0.419804,-0.0103663,-0.00635265,0.0594056,0.0534505,-0.00462183,
1 878744 878744,879381,1560000,1864659,1877659 0.000404537,-0.000235215,-1.4455e-05,-8.69137e-06,-3.1027e-05,
* An example log file is in the following:
* An example log file is in the following:
