Changes

* An example command line to use when you have genotype info saved in VCF file and you want to adjust covariates first and then inverse normalize residuals is as following:

* An example command line to use when you have genotype info saved in VCF file and you want to adjust covariates first and then inverse normalize residuals is as following:

   ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --makeResiduals --useCovariates --inverseNormal --prefix your.study

   ./raremetalworker --ped your.pheno.ped --dat your.pheno.dat --vcf your.geno.vcf.gz --makeResiduals --useCovariates --inverseNormal --prefix your.study

* For more examples, please go to [[Examples]].

* For more examples, please go to [[http://genome.sph.umich.edu/wiki/Rare-Metal-Worker#Examples Examples]].

== Software Specifications ==

== Software Specifications ==