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Changes
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If you have any questions, please contact: sfengsph at umich dot edu
If you have any questions, please contact: sfengsph at umich dot edu
== Key Features ==
== Key Features ==
== Q & A ==
== Q & A ==
== Change Log ==
* Version 0.0.1 was released on 11/13/2012.
* Modified Rare-Metal-Worker to let it output LD matrix by a sliding window. (11/14/2012)
* Uploaded to public wiki. (11/16/2012)
* Enabled writing log file by defalut. (11/18/2012)
* Forced sample IDs to be matched when reading in kinship from a file. Perform a sanity check before reading in kinship file. If a sample of interest is not included in kinship file, then fatal error will occur. (11/19/2012)
* Added HWE pvalue and call rate in summary statistics output. (11/27/2012)
* Bugs fixed to solve compiling errors on some machines (Thank you Mary Kate!). Version 0.0.2 released. (11/30/2012)
* Updated output format. Version 0.0.3 released. (12/3/2012)
* More messages coded into log file. (12/4/2012)
* Version 0.0.4 released. (12/5/2012)
* Bug fixed for empirical kinship calculation when genotypes are read from VCF file. Version 0.0.5 released. (12/6/2012)
* Version 0.0.6 released. (12/6/2012)
* Updated output format for monomorphic sites. (12/7/2012)
* Changed executable name into bin/raremetalworker. Version 0.0.7 released. (12/10/2012)
* Fixed a bug when reading vcf file with ref or alt allele is missing. (2/5/2013)
* Fixed a bug when there is missing genotype from VCF file. (2/2013)
* Fixed a bug when handling chromosome X. Added sex labels option. (3/2/2013)
* Optimized code to speed up the process of calculating empirical kinship. (3/3/2013)
* Updated code to report allele frequencies calculated only from selected samples. (3/3/2013)
