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* --dominant allows additional association results (pvalue, effect size, and standard error) generated using dominant model. If VCF file is used, then non-reference allele is considered the dominant allele. If PED/DAT files are used for genotype, then minor allele is considered the dominant allele.
* --dominant allows additional association results (pvalue, effect size, and standard error) generated using dominant model. If VCF file is used, then non-reference allele is considered the dominant allele. If PED/DAT files are used for genotype, then minor allele is considered the dominant allele.
* --recessive and --dominant options can be used together.
* --recessive and --dominant options can be used together.
* Currently, genomic control is calculated based on results using additive model only. QQ plot and Manhattan plots are also generated from additive model.
* Recessive and dominant results are stored in separate files.
==== Kinship Source ====
==== Kinship Source ====
