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RAREMETALWORKER (view source)

Revision as of 20:13, 11 March 2014

201 bytes added ,  20:13, 11 March 2014
→‎Software Options
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  Options:
 
  Options:
−
       Input Files : --ped [], --dat [], --vcf [], --dosage
+
       Input Files : --ped [], --dat [], --vcf [], --dosage, --noeof
 
       Output Files : --prefix [], --LDwindow [1000000], --zip, --thin,
 
       Output Files : --prefix [], --LDwindow [1000000], --zip, --thin,
 
                     --labelHits
 
                     --labelHits
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       Chromosome X : --xLabel [X], --xStart [2699520], --xEnd [154931044],
 
       Chromosome X : --xLabel [X], --xStart [2699520], --xEnd [154931044],
 
                     --maleLabel [1], --femaleLabel [2]
 
                     --maleLabel [1], --femaleLabel [2]
−
         PhoneHome : --noPhoneHome, --phoneHomeThinning [50]
+
         PhoneHome : --noPhoneHome, --phoneHomeThinning [100]  
      Line 114: Line 114:  
   22 16050933 37239784 G A . PASS AC=141;AN=904 GT:DS:GP 0/0:0.0:1,0,0 0/0:0.0:1,0,0 0/0:0.0:1,0,0
 
   22 16050933 37239784 G A . PASS AC=141;AN=904 GT:DS:GP 0/0:0.0:1,0,0 0/0:0.0:1,0,0 0/0:0.0:1,0,0
    +
* --noeof allows using VCF file without BGZF EOF markers. This is a very rare option to use. If your run is terminated with error message: "", then you might want to check out this option.
 
==== Output Files ====
 
==== Output Files ====
 
* --prefix is optional.  
 
* --prefix is optional.  
Shuang Feng
2,004

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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/9652"

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