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Revision as of 11:13, 14 April 2014
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This page describes how RAREMETALWORKER handles some special cased during analyses.
This page describes how RAREMETALWORKER handles some special cased during analyses.
== Handling Unrelated Individuals ==
== Handling Unrelated Individuals==
* When each individual has a different famid from each other, or each sample is coded to have different families, and --kinGeno (or --kinFile) option is not issued, RAREMETALWORKER consider the samples as unrelated. No cryptic relationship or population structure will be adjusted in this situation.
* When each individual has a different famid from each other, or each sample is coded to have different families, and --kinGeno (or --kinFile) option is not issued, RAREMETALWORKER consider the samples as unrelated. No cryptic relationship or population structure will be adjusted in this situation.
* The easiest way to code the samples as unrelated is to let famid (the first column) the same as the sample ID (the second column) in PED file.
* The easiest way to code the samples as unrelated is to let famid (the first column) the same as the sample ID (the second column) in PED file.
