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, 13:48, 14 April 2014
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| == Analyzing Chromosome X== | | == Analyzing Chromosome X== |
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− | * To make sure RAREMETALWORKER analyze chromosome X correctly, '''male has to be code as 1 and female has to be coded as 2''' in [[RAREMETALWORKER#PED_and_DAT_Files | '''PED''']] file. | + | * To make sure RAREMETALWORKER analyze chromosome X correctly, '''male must be code as 1 and female must be coded as 2''' in [[RAREMETALWORKER#PED_and_DAT_Files | '''PED''']] file. |
| * --xStart and --xEnd options described the start and end position of nonPAR region on chromosome X. The default values are 2699520 and 154931044, according to Human Genome build 19. | | * --xStart and --xEnd options described the start and end position of nonPAR region on chromosome X. The default values are 2699520 and 154931044, according to Human Genome build 19. |
| * When samples are analyzed as unrelated (no any kind of kinship is used for linear mixed model approach), no special actions needed for analyzing markers on chromosome X. | | * When samples are analyzed as unrelated (no any kind of kinship is used for linear mixed model approach), no special actions needed for analyzing markers on chromosome X. |