RAREMETALWORKER SPECIAL TOPICS
From Genome Analysis Wiki
Revision as of 11:19, 14 April 2014 by Shuang Feng (talk | contribs)
This page describes how RAREMETALWORKER handles some special cased during analyses.
RAREMETALWORKER generates single variant association test statistics for a single study prior to meta-analysis. This page provides a brief description of the statistics that RAREMETALWORKER calculates, together with key formulae.
Missing Data
- Individuals with missing phenotypes will be excluded from analysis.
- If --makeResiduals is used for adjusting covariates, then individuals with missing covariates will also be excluded.
- Individuals that are not genotyped will also be excluded from analyses.