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, 12:27, 14 April 2014
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| ==Output Files== | | ==Output Files== |
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| + | ===--prefix=== |
| + | * --prefix takes a value of a string as the prefix of your output files. |
| + | * For a full list of output files generated by RAREMETALWORKER, please refer to [[RAREMETALWORKER#OUTPUT_FILE_FORMATS | '''output''']]. |
| + | |
| + | ===--LDwindow=== |
| + | *--LDwindow takes a integer value as the size of the moving window. |
| + | * RAREMETALWORKER generates LD matrices between a current marker that it is working on and all markers within this window. |
| + | * The default size is 1 million bases. |
| + | * For more information about the LD matrix, please refer to [[RAREMETALWORKER#LD_Matrices | '''LD matrix''']]. |
| + | |
| + | ===--zip=== |
| + | * By issuing --zip, RAREMETALWORKER compress the [[ RAREMETALWORKER#Summary_Statistics| '''summary statistics''']] and [[RAREMETALWORKER#LD_Matrices | '''LD matrices''']] generated automatically, using gzip. |
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| + | === --thin === |
| + | |
| + | ===--labelHits=== |
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| ==VC Options== | | ==VC Options== |