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, 13:53, 9 July 2013
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− | '''Rare Metal''' is a tool for gene-based meta-analysis, based upon summary statistics generated from individual data using [http://genome.sph.umich.edu/wiki/Rare-Metal-Worker '''Rare Metal Worker'''] or [http://genome.sph.umich.edu/wiki/Rvtests '''rvtests''']. | + | '''Rare Metal''' is a tool for gene-based meta-analysis, based upon summary statistics generated from individual data using [http://genome.sph.umich.edu/wiki/Rare-Metal-Worker '''Rare Metal Worker''']. |
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− | (Some curious wiki user may find [http://genome.sph.umich.edu/wiki/RareMETALS "RareMETALS"]. It is to perform meta-analysis in R and is developed earlier by Dajiang)
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| If you have any questions, please contact: sfengsph at umich dot edu | | If you have any questions, please contact: sfengsph at umich dot edu |
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| ==== List of Studies ==== | | ==== List of Studies ==== |
| * --studyName option is crucial for '''Rare Metal''' to work. Ignoring this option will lead to FATAL ERROR and '''Rare Metal''' will stop. | | * --studyName option is crucial for '''Rare Metal''' to work. Ignoring this option will lead to FATAL ERROR and '''Rare Metal''' will stop. |
− | * Use --studyName to specify a plain txt file. That file should contain the path and prefix of the studies you want to include, one per line. | + | * The file should contain the path and prefix of the studies you want to include. |
| * If there is one or more studies that you want to excluded from your list, but want to save some effort of generating a new file, you can put a "#" in front of the line of record. '''Rare Metal''' will automatically exclude that study from meta analysis. | | * If there is one or more studies that you want to excluded from your list, but want to save some effort of generating a new file, you can put a "#" in front of the line of record. '''Rare Metal''' will automatically exclude that study from meta analysis. |
| * An example file is in the following: | | * An example file is in the following: |