Changes

From Genome Analysis Wiki
Jump to navigationJump to search
6 bytes removed ,  17:51, 13 April 2015
Line 74: Line 74:  
   
 
   
 
  ###result can be explored as below###
 
  ###result can be explored as below###
   > names(res10)
+
   > names(res)
 
   [1] "p.value"            "ref"                "alt"                "integratedData"    "raw.data"           
 
   [1] "p.value"            "ref"                "alt"                "integratedData"    "raw.data"           
 
   [6] "clean.data"        "statistic"          "direction.by.study" "anno"              "maf"               
 
   [6] "clean.data"        "statistic"          "direction.by.study" "anno"              "maf"               
 
   [11] "QC.by.study"        "no.sample"          "beta1.est"          "beta1.sd"          "hsq.est"           
 
   [11] "QC.by.study"        "no.sample"          "beta1.est"          "beta1.sd"          "hsq.est"           
 
   [16] "nearby"            "pos"     
 
   [16] "nearby"            "pos"     
   > print(res10$pos)
+
   > print(res$pos)
 
   [1] "19:11200093" "19:11200213" "19:11200235" "19:11200272" "19:11200282" "19:11200309" "19:11200412" "19:11200419"
 
   [1] "19:11200093" "19:11200213" "19:11200235" "19:11200272" "19:11200282" "19:11200309" "19:11200412" "19:11200419"
 
   [9] "19:11200431" "19:11200442" "19:11200475" "19:11200508" "19:11200514" "19:11200557" "19:11200579" "19:11200728"
 
   [9] "19:11200431" "19:11200442" "19:11200475" "19:11200508" "19:11200514" "19:11200557" "19:11200579" "19:11200728"
 
   [17] "19:11200753" "19:11200754" "19:11200806" "19:11200839" "19:11200840" "19:11200896" "19:11201124" "19:11201259"
 
   [17] "19:11200753" "19:11200754" "19:11200806" "19:11200839" "19:11200840" "19:11200896" "19:11201124" "19:11201259"
 
   [25] "19:11201274" "19:11201275"
 
   [25] "19:11201274" "19:11201275"
   > print(res10$p.value)
+
   > print(res$p.value)
 
   [1] 0.551263675 0.056308558 0.172481571 0.734935815 0.922326732 0.053804524 0.886985353 0.903835162 0.005280228 0.266575301
 
   [1] 0.551263675 0.056308558 0.172481571 0.734935815 0.922326732 0.053804524 0.886985353 0.903835162 0.005280228 0.266575301
 
   [11] 0.196122312 0.157114376 0.951477852 0.840523624 0.759482777 0.112743041 0.414147263 0.825877149 0.006090142 0.096474975
 
   [11] 0.196122312 0.157114376 0.951477852 0.840523624 0.759482777 0.112743041 0.414147263 0.825877149 0.006090142 0.096474975
98

edits

Navigation menu