Line 87: |
Line 87: |
| [1,] "0.03237" "0.05" "+-" | | [1,] "0.03237" "0.05" "+-" |
| direction.meta.single.var.out | | direction.meta.single.var.out |
− | [1,] "++--+++-+--++-++-++---++-++-+----++-+++-++-++--+--++-++----++-++++++++---+++-------+++--++-++---++----++--+--+-+-++--+++++++-++-++----+-+++----+++----++---+---+---++++---+-+--+--+++--+--+-++--++-+-+++---+++++-----++--+-++---+----++-+-++--+-+++-++-+++-+--++---+---+++++-+----+++ -+--++---+---++++---+++---+-+++++----+---+-+----+++-++-" | + | [1,] "++--+++-+--++-++-++---++-++-+----++-+++-++-++--+--++-++----++-++++++++---+++-------+++--++-++---++----++--+--+-+-++--+++++++-++-++-- |
| + | --+-+++----+++----++---+---+---++++---+-+--+--+++--+--+-++--++-+-+++---+++++-----++--+-++---+----++-+-++--+-+++-++-+++-+--++---+--- |
| + | +++++-+----+++ -+--++---+---++++---+++---+-+++++----+---+-+----+++-++-" |
| top.singlevar.pos top.singlevar.refalt top.singlevar.pval top.singlevar.af | | top.singlevar.pos top.singlevar.refalt top.singlevar.pval top.singlevar.af |
| [1,] "19:45662295" "G/A" "7.804e-15" "0.02303" | | [1,] "19:45662295" "G/A" "7.804e-15" "0.02303" |
| pos.ref.alt.out | | pos.ref.alt.out |
− | | + | [1,] "19:42907064/A/G,19:42909626/C/T,19:42909645/C/T,19:42910407/C/T,19:42910454/C/T,19:42911617/T/C,19:42911869/C/T,19:42912216/C/T,19:42912223/C/T, |
− | [1,] "19:42907064/A/G,19:42909626/C/T,19:42909645/C/T,19:42910407/C/T,19:42910454/C/T,19:42911617/T/C,19:42911869/C/T,19:42912216/C/T,19:42912223/C/T,19:42912229/C/T,19:42914626/C/T,19:42914668/G/A,19:42914703/C/T,19:42914880/C/T,19:42930652/C/T,19:42930721/G/A,19:42931022/C/T,19:43013329/G/T,19:43031219/T/C,19:43093001/G/A,19:43093011/C/T,19:43093026/T/C,19:43097692/C/T,19:43097788/C/T,19:43243059/C/T,19:43268142/G/T,19:43411959/C/G,19:43411997/G/A,19:43420322/C/T,19:43420408/G/C,19:43420415/G/A,19:43420565/C/T,19:43433773/C/T,19:43439628/A/G, | + | 19:42912229/C/T,19:42914626/C/T,19:42914668/G/A,19:42914703/C/T,19:42914880/C/T,19:42930652/C/T,19:42930721/G/A,19:42931022/C/T,19:43013329/G/T,19:43031219/T/C, |
| + | 19:43093001/G/A,19:43093011/C/T,19:43093026/T/C,19:43097692/C/T,19:43097788/C/T,19:43243059/C/T,19:43268142/G/T,19:43411959/C/G,19:43411997/G/A,19:43420322/C/T, |
| + | 19:43420408/G/C,19:43420415/G/A,19:43420565/C/T,19:43433773/C/T,19:43439628/A/G, |
| | | |
| rareMETALS2.range <- function(score.stat.file,cov.file,range,range.name,test='GRANVIL',maf.cutoff=1,alternative=c('two.sided','greater','less'), | | rareMETALS2.range <- function(score.stat.file,cov.file,range,range.name,test='GRANVIL',maf.cutoff=1,alternative=c('two.sided','greater','less'), |