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The VCF format encodes genotypes by the index of the enumeration of genotypes give a ploidy number and alleles.
 
The VCF format encodes genotypes by the index of the enumeration of genotypes give a ploidy number and alleles.
Ploidy and alles are independent of one another while genotypes are a function of them.
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This allows for direct access to a genotype value within an array particularly when one works with genotype likelihoods.
    
= Motivation =
 
= Motivation =
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