61
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
# I recommend creating a new directory:
# I recommend creating a new directory:
#: <code> cd ~/dev</code>
#: <code> cd ~/dev</code>
#: <code> git clone git://github.com/statgen/gotcloud.git</code>
#: <code> git clone git@github.com:statgen/gotcloud.git</code>
#: <code> cd gotcloud</code>
#: <code> cd gotcloud</code>
# Build the source
# Build the source
#: <code> cd src</code>
#: <code> cd src && make && cd ..</code>
# Run the tests, ensure they all succeed
# Run the tests, ensure they all succeed
#: <code>./gotcloud align --test testDir</code>
#: <code> cd src && make test && cd ..</code>
#: <code>./gotcloud test</code>
#: <code>./gotcloud indel --test testDir</code>
# Update the version number (if you have not already).
# Update the version number (if you have not already).
#* Edit release_version.txt
#* Edit release_version.txt
#: <code>git checkout latest</code>
#: <code>git checkout latest</code>
#: <code>git merge master</code>
#: <code>git merge master</code>
#: <code>git push</code>
#: <code>git checkout master</code>
#: <code>git checkout master</code>
#: <code>git push</code>
# Create and push a release tag
#: <code>git tag -a gotcloud.1.XX -m 'version 1.XX'</code>
#: <code>git tag -a gotcloud.1.XX -m 'version 1.XX'</code>
#: <code> git push origin gotcloud.1.XX</code>
#: <code> git push origin gotcloud.1.XX</code>
# Create the packages (debian and tar)
# Create the debian packages
#* Generate the packages
#*: <code> ./debian/makedeb.sh bin =</code>
#* Generate the packages & copy to ftp://share.sph.umich.edu/gotcloud/ (all done for you by the script)
#*: <code> ./debian/makedeb.sh test =</code>
#*: <code> /net/wonderland/home/mktrost/gc-admin/genDebs.sh</code>
#*: <code>y</code>
# Generate the release notes on github
# Generate the release notes on github
#: On github, login
#: On github, login
#::Goto Tags, Select "Draft New Release"
#::Goto Tags, Select "Draft New Release"
# Update wiki release documentation
#::* Select the "Tag version" you created
#::* Fill in the release notes
# Update wiki release documentation (for full release)
#* http://genome.sph.umich.edu/wiki/GotCloud:_Versions
#* http://genome.sph.umich.edu/wiki/GotCloud:_Versions
# Send Email to google group
# Send Email to google group (for full release)
#* gotcloud@googlegroups.com
#* gotcloud@googlegroups.com
#* I usually do it from the groups site as an announcement & post on behalf of GotCloud (I may need to modify your permissions to do this)
#* I usually do it from the groups site as an announcement & post on behalf of GotCloud (I may need to modify your permissions to do this)
#** https://groups.google.com/forum/?hl=en#!forum/gotcloud
#** https://groups.google.com/forum/?hl=en#!forum/gotcloud
# Install on mario
# Install on mario
#* In the gotcloud directory where you generated the deb files, run:
#*: <code>./debian/install_gotcloud_without_root.sh 1.16 /net/mario</code>
#* Install the latest gotcloud in the gotcloud.old directory (named by version) so someone can run a specific version
#*: <code>./debian/install_gotcloud_without_root.sh 1.16 /net/mario/gotcloud.old</code>
#* Rename to the version name:
#*: <code>mv /net/mario/gotcloud.old/gotcloud /net/mario/gotcloud.old/gotcloud.1.XX</code>
# Send email to csg group to inform them of the newly installed version on the cluster and of any relevant changes
# Send email to csg group to inform them of the newly installed version on the cluster and of any relevant changes
#* gotcloudUsers@umich.edu
#* gotcloudUsers@umich.edu
