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[[Category:Software]]
[[Category:Software]]
= Overview =
= Overview =
'''(See [[http://zhanxw.github.io/rvtests rvtests]] for more powerful rare-variant association test software and/or preparation for meta-analysis)'''
A few rare variants tests (Li-Leal's CMC and Madsen-Browning's weighted method) are implemented in the logisitc regression framework using C++. Please contact Youna Hu (youna@umich.edu) for comments, suggestions or questions.
A few rare variants tests (Li-Leal's CMC and Madsen-Browning's weighted method) are implemented in the logisitc regression framework using C++. Please contact Youna Hu (youna@umich.edu) for comments, suggestions or questions.
;--genofile: A genotype 012 matrix (.012 is the file) This file can be prepared by using the prepare012s
;--genofile: A genotype 012 matrix (.012 is the file) This file can be prepared by using the prepare012s
source code [[File:]]
source code [[File:vcfReader.v1.tar]]
Again, extract the tar file and then go into the directory to type make all to compile the code,
Again, extract the tar file and then go into the directory to type make all to compile the code,
you then will find binary file in the executables folder.
you then will find binary file in the executables folder.
