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===== Q: What is SAM/BAM? =====
 
===== Q: What is SAM/BAM? =====
* A: See: [[SAM]] and [[BAM]]
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* A: See: [[SAM]] and [[BAM]].  [[SAM]] also provides additional details as to what is a CIGAR, QUALITY, and TAG.
    
===== Q: Map between a query/read sequence and a reference sequence to do things like looking up a base/quality at a given reference position or looking up a reference base for a given read position? =====
 
===== Q: Map between a query/read sequence and a reference sequence to do things like looking up a base/quality at a given reference position or looking up a reference base for a given read position? =====

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