Changes

===== Q: Map between a query/read sequence and a reference sequence to do things like looking up a base/quality at a given reference position or looking up a reference base for a given read position? =====

===== Q: Map between a query/read sequence and a reference sequence to do things like looking up a base/quality at a given reference position or looking up a reference base for a given read position? =====

* A: Use [[C++ Class: CigarRoller#Mapping Between Reference and Read/Query|CigarRoller::getQueryIndex & CigarRoller::getRefOffset]]

* A: Use [[C++ Class: CigarRoller#Mapping Between Reference and Read/Query|Cigar::getQueryIndex & Cigar::getRefOffset]]

===== Q: Read only portions of a sorted & indexed BAM file that fall within a specified region? =====

===== Q: Read only portions of a sorted & indexed BAM file that fall within a specified region? =====